Publications

Shipman SL, Nivala J, Macklis JD, Church GM (2017) CRISPR-Cas encoding of a digital movie into the genomes of a population of living bacteria. Nature 547:345

Chari R, Church GM. (2017) Beyond editing to writing large genomes. Nat Rev Genet. [Epub ahead of print]

Chari R, Yeo NC, Chavez A, Church GM. (2017) sgRNA Scorer 2.0: A Species-Independent Model To Predict CRISPR/Cas9 Activity. ACS Synth Biol 6:902

Aach J, Lunshof J, Iyer E, Church G, M. (2017) Addressing the ethical issues raised by synthetic human entities with embryo-like features. eLife pii: e20674. doi: 10.7554/eLife.20674.

Wang G, Yang L, Grishin D, Rios X, Ye LY, Hu Y, Li K, Zhang D, Church GM, Pu WT. (2017) Efficient, footprint-free human iPSC genome editing by consolidation of Cas9/CRISPR and piggyBac technologies. Nat Protoc 12:88

Chavez A, Tuttle M, Pruitt BW, Ewen-Campen B, Chari R, Ter-Ovanesyan D, Haque SJ, Cecchi RJ, Kowal EJ, Buchthal J, Housden BE, Perrimon N, Collins JJ, Church G. (2016) Comparison of Cas9 activators in multiple species. Nat Methods 13:563

Shipman SL, Nivala J, Macklis JD, Church GM. (2016) Molecular recordings by directed CRISPR spacer acquisition. Science 353:463

Chen F, Wassie AT, Cote AJ, Sinha A, Alon S, Asano S, Daugharthy ER, Chang JB, Marblestone A, Church GM, Raj A4 Boyden ES. (2016) Nanoscale imaging of RNA with expansion microscopy. Nat Methods 13:679

Foundational Publications

Beliveau BJBoettiger ANAvendaƱo MSJungmann RMcCole RBJoyce EFKim-Kiselak CBantignies FFonseka CYErceg JHannan MAHoang HGColognori DLee JTShih WMYin PZhuang XWu CT (2015) Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes. Nat Commun. 6:7147

Chen F, Tillberg PW, Boyden ES. (2015) Optical imaging. Expansion microscopy. Science 347(6221):543

Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Ferrante TC, Terry R, Turczyk BM, Yang JL, Lee HS, Aach J, Zhang K, Church GM. (2015) Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues. Nat Protoc. 10(3):442-58.

Kolesky DB, Truby RL, Gladman AS, Busbee TA, Homan KA, Lewis JA (2014) 3D bioprinting of vascularized, heterogeneous cell-laden tissue constructs. Adv Mater. 26(19):3124

Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Yang JL, Ferrante TC, Terry R, Jeanty SS, Li C, Amamoto R, Peters DT, Turczyk BM, Marblestone AH, Inverso SA, Bernard A, Mali P, Rios X, Aach J, Church GM. (2014) Highly multiplexed subcellular RNA sequencing in situ. Science 343(6177):1360